FastQCFastQC Report
Sun 21 May 2023
EGAF00007951221

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951221
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences375980
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50311.338103090589925No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14420.3835310388850471No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG13350.35507207830203735No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10280.27341879887228043No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7600.20213841161763924No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG6140.1633065588595138No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5370.14282674610351614No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5140.13670939943614022No Hit
AACGCATTCCGTCTGAAGAGCCTGGCTAAAT4180.11117612638970158No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4080.10851641044736422No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4060.10798446725889675No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG3940.10479280812809191No Hit
CTGGCTGAAAACGGTCACAACGTATGGGCAC3920.10426086493962444No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG3820.10160114899728709No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)