FastQCFastQC Report
Wed 31 May 2023
EGAF00007951226

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951226
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences390162
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT48971.255119668240372No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT38820.9949713196057022No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG26360.6756167950748664No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT25230.646654466606179No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG23260.5961626196297948No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA22870.5861667717512213No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT21760.5577170508660505No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA19900.5100445455990076No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19060.4885150270913107No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCTGCT15580.3993213075594241No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG14940.3829178648868931No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13600.3485731567912816No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG13380.3429344733725991No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA11400.2921863226044566No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11210.287316550561049No Hit
TGCGTCACGACGCTGCTGAATTTGCGGGTTGGTCTGCATTTTTT10390.26629963963686876No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9380.24041295666928095No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT9070.23246753912477383No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT8750.22426581778850838No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG8650.2217027798709254No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG8120.20811867890773578No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA8060.206580856157186No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA7960.20401781823960302No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7410.1899211096928968No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7290.18684546419179726No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA6570.1683915911852No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6430.16480333810058387No Hit
CGGGATTTCTTCGTAGTCGTTTTCATACCAATCCGGGTTGTGCA6410.16429073051706727No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG6070.15557640159728522No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC5820.14916880680332786No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5800.14865619921981124No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5770.14788728784453636No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5680.14558055371871173No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5410.13866035134123775No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5250.13455949067310502No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5130.13148384517200548No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5120.13122754138024717No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG5090.1304586300049723No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5060.12968971862969741No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4740.12148799729343196No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4610.11815604800057412No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4360.11174845320661674No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4200.10764759253848401No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT4200.10764759253848401No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG3990.10226521291155982No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT3950.10123999774452665No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG3930.10072739016101004No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)