FastQCFastQC Report
Wed 31 May 2023
EGAF00007951228

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951228
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences411135
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8600.20917703430746593No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG7010.17050360587155072No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT6870.1670983983363129No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT5800.14107288360270956No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4830.1174796599657047No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC4420.10750726646965107No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4260.10361560071509357No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4170.10142653872815498No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)