FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007951229

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951229
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences411135
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG54161.3173288579177156No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8230.2001775572500517No Hit
ATGTCCAACATGGACATCGATGGTATTAACA7060.17171975141984994No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT6730.16369319080107506No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5390.13110049010665598No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5350.13012757366801658No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4850.1179661181850244No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4500.10945309934692984No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4360.10604789181169202No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4160.10118330961849514No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)