FastQCFastQC Report
Sun 21 May 2023
EGAF00007951230

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951230
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422626
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA33620.7955024063829484No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA29630.7010926918836039No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21610.5113267995816633No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA16290.3854471802492038No Hit
GGCACCAACGAACGCACGCACAGCGGATGCGGTTACGTCCTGCG14940.35350404376446315No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG13290.3144624325053357No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC13090.3097301159890778No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9730.23022719851594556No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9230.21839640722530088No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG8800.20822192671534645No Hit
CTGCTGACGCGGACGCGGGCGGAACGGACGACGGTAACGTGGAC8750.20703884758628194No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG8390.19852067785701777No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7610.1800646434436121No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG7580.1793547959661734No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7320.17320278449503818No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6130.1450455012233038No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5970.14125964801029753No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5960.14102303218448464No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5940.14054980053285884No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA5470.12942885671965285No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5180.12256699777107892No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT4900.11594175464831791No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4730.1119192856094987No Hit
AGATGGCGCGTTGGAAGTAACTTTGTTGTTGGTGTCATCGGCGG4640.10978974317718267No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)