FastQCFastQC Report
Sun 21 May 2023
EGAF00007951231

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951231
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422626
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT73401.7367601614666395No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21890.5179520427044243No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC17790.4209395541211378No Hit
ATGATGGCTCGTCGCACCGTTGATTTCAAAA15580.36864745661648834No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13150.3111498109439552No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC12870.3045245678211942No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG12600.298135940524246No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12110.2865417650594142No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC9870.23353982007732607No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9790.2316468934708229No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC9370.2217090287866814No Hit
CGTCCGCCGAACCAGCAGCAGCCGATCGAGG8950.21177116410253985No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8410.19899390950864357No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7950.18810958152125046No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7850.18574342326312154No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6540.15474675008163247No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6240.14764827530724564No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6120.14480888539749093No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG5460.12919224089383993No Hit
GCGGAGCAGCACACGCCGATGAAGGCGCACG5250.12422330855176918No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5040.11925437620969842No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4940.11688821795156946No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4450.10529404248673768No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4290.1015081892737314No Hit

[OK]Adapter Content

Adapter graph