FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951236

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951236
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences530528
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT29100.5485101634597985No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC21720.40940346221123114No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG19340.3645424935158936No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19330.3643540020507871No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16930.3191160504252367No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15070.2840566379154352No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG13710.25842179866095666No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG12800.24126907533626876No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11690.2203465227094517No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11060.20847156040774473No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11030.20790608601242538No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT10400.1960311237107184No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10050.18943392243199228No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9770.18415616140901142No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9700.18283672115326619No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG9590.18076331503709514No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9180.17303516496773025No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8600.1621026599915556No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7960.15003920622474215No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT7920.14928524036431629No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7620.14363049641112252No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA7440.14023765003920624No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6460.12176548645877316No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG6380.12025755473792146No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA6240.11761867422643102No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5510.10385879727365945No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG5380.10140840822727548No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)