FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951241

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951241
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504607
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT58211.1535709968351608No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA45470.9010972895738665No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41230.8170715031697935No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT29510.5848115464113657No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18670.36999090381227373No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15430.3057825198619916No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13710.2716965876414715No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10460.20729002966665147No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10380.2057046374703482No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9210.18251827659941303No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8460.1676552247590699No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG8020.15893556767940198No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7590.15041408462427194No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC7060.13991086132376285No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG6760.13396564058762564No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6700.13277659644039816No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6620.13119120424409492No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6240.12366059131165441No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA6200.12286789521350279No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5990.11870624069820672No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5990.11870624069820672No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5990.11870624069820672No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT5750.11395006410929694No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5680.11256284593753159No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5470.1084011914222355No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC5400.10701397325047017No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5170.1024559706860983No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5160.10225779666156037No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)