FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007951242

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951242
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences547178
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11030.20157974187558708No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10830.19792462416252116No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8680.1586321087470622No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7920.1447426614374116No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7660.13999100841042586No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6990.12774636407165493No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6210.11349140499069774No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6170.11276038144808455No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5530.1010640047662735No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)