FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951243

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951243
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences547178
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45640.8340978621216496No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13890.25384792517243016No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10800.19737635650556123No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9840.1798317914828447No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8710.1591803764040221No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8540.15607352634791602No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8310.1518701409778902No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7660.13999100841042586No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7210.13176699355602747No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7060.129025655271228No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5990.10947077550632518No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5950.108739751963712No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)