FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951245

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951245
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences516873
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT61911.1977797253870874No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA51961.0052759575369579No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43120.8342474843917171No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT26610.5148266595469293No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA23560.45581796688935194No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA18660.36101711639029316No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG16110.3116819799060891No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13350.25828394982906827No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC12310.2381629529884517No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA11310.218815840641705No Hit
CTGATGCGTATGAAGGAAGTATCTAGCGTTT11260.21784848502436768No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT10730.20759451548059193No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA10560.20430550638164502No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9870.1909559988623898No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9010.17431748224418764No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7620.14742499608220974No Hit
CACACCCCTCCGATGCCGTCTATCGGTCTGG7270.14065350676084842No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG7100.13736449766190145No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7070.13678408429149908No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6790.13136689283441No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6560.12691705699465824No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6400.12382151901917879No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6380.12343457677224386No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6360.12304763452530892No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6240.12072598104369932No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6050.11705002969781746No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6020.11646961632741505No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA5990.11588920295701265No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA5870.11356754947540305No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5780.11182630936419585No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5720.11066548262339104No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5650.10931118475911877No Hit
GAAGACGGTAAGGTTATGGTCCTGTGCAACC5630.10892424251218384No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5410.10466787779589957No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5320.10292663768469237No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)