FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951246

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951246
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences534633
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC27310.5108177011145963No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT27010.5052063752143995No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT26780.5009043586909151No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC23290.4356259340519571No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT21830.40831748133766527No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20880.3905482826537082No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG20000.3740883933464638No Hit
TGGCAGGTCCGGCTGCGGCGGCAGCATTGGACGCGCCGGGGCGG19500.36473618351280224No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC17570.3286366535548685No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT15830.29609096333372614No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG15660.2929112119902812No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT15520.2902925932368559No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14750.2758901900930171No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG13230.24745947219868583No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC12340.2308125386947682No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11720.2192157985010278No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11360.21248220742079146No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9630.18012356139632232No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA8930.1670304676291961No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8890.16628229084250318No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8880.16609524664582992No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8410.15730416940218803No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG8140.15225397609201077No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7950.14870013635521936No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC7350.13747748455482545No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7170.1341106890147073No Hit
CTGCAGGTCTGGAAATTCGTCATCCTGGCACATGTGTACAACTG6640.12419734659102599No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6190.11578035774073056No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6060.11334878318397855No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG5860.1096078992505139No Hit
TTTACGGGTCGGCGGCGGCGGCTGCTGTTGACGCTGCTGCAGGT5860.1096078992505139No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5770.10792450148045482No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG5760.10773745728378159No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5570.10418361754699018No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5350.10006864522017908No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)