FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951247

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951247
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences534633
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA55991.0472604571734256No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC27290.5104436127212498No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC27070.5063286403944388No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG26980.5046452426243797No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA26320.4923003256439464No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA22770.4258996358249491No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA21880.4092527023210314No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCT21490.40195797865077537No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG20410.38175720541006636No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT16940.3168528691644549No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT16620.31086745487091144No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC16560.30974518969087206No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16190.30282455441396244No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12770.23885543915171717No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT12560.23492751102157927No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12080.22594938958126415No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC12010.22464008020455153No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9900.1851737547064996No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9620.17993651719964912No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT9370.1752604122828183No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9220.17245474933271981No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8900.1664693350391764No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8890.16628229084250318No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC8630.16141914172899915No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7880.14739082697850675No Hit
GAAGTGCTGGATCTGTCCATCCACGGCCGCC7450.13934792652155778No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7240.1354199983914199No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7090.13261433544132145No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6590.12326212560765984No Hit
CCAGCGGCTGAAGCTCACGCCGCGCGTTCCG6580.1230750814109866No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6570.12288803721431336No Hit
ATGGAATCTTTCGAAGGCCAGGGCGACTCCC6530.12213986042762044No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6300.11783784390413611No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6120.11447104836401793No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5650.10567997112037604No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5550.1038095291536437No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5530.10343544076029726No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5450.1019390871869114No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG5390.100816822006872No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)