FastQCFastQC Report
Sun 21 May 2023
EGAF00007951250

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951250
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533967
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG28220.5284970794075289No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT25040.4689428372914431No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC24040.4502150881983344No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT21760.4075158202660464No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG19620.3674384372067937No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16210.30357681279929283No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16150.3024531478537063No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15020.28129079137849344No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14920.2794180164691826No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14040.26293759726724686No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT12800.23971518839179198No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12090.2264184865356848No Hit
ACCCTGGTGCAGACCCAGGACTGGAGACAGTTCCGGCATGGACG10610.19870141787788387No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG10040.18802660089481185No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9750.1825955536578103No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8900.16667696692866787No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8420.15768764736397567No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8320.1558148724546648No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8090.1515074901632498No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG7630.14289272558041977No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG7600.1423308931076265No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG7080.13259246357920995No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6900.12922146874245036No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG6700.12547591892382864No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5990.11217921706772141No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5960.11161738459492816No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5940.11124282961306599No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5900.11049371964934163No Hit
CACGCAGGCACCACGACGGCGACGAGACGGCGGCGGAGTAGGTT5770.1080591122672375No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5490.10281534252116703No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5370.10056801262999399No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)