FastQCFastQC Report
Wed 31 May 2023
EGAF00007951251

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951251
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533967
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32240.6037826307618261No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC32150.6020971333434463No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG29680.5558395930834678No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT26940.5045255605683497No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC20750.38860079368200656No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG20210.37848780917172786No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17900.3352267087666466No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16300.30526231021767264No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15070.28222717883314885No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC13360.25020272788393294No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12350.23128770129989307No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA10940.2048815750786097No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10300.19289581565902011No Hit
CGTGGCCAGAGCCGTGGCCGTGGCCGTGGTC9610.17997366878477508No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9600.179786391293844No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9430.17660267394801551No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9290.17398078907498027No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8990.16836246434704766No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8320.1558148724546648No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG8150.15263115510883632No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8100.15169476765418088No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT7930.14851105030835238No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7460.1397090082345913No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA6920.12959602372431256No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6860.12847235877872604No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6590.12341586652358666No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6330.11854665175937838No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6250.1170484318319297No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6240.1168611543409986No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5940.11124282961306599No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5880.11011916466747945No Hit
GACAAAGCGGAAGCTCAGAGCACCCCGGAAC5840.1093700547037551No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5530.10356445248489139No Hit
GACAAAGCGGAGGCCCAGTCTACCCCGGAAC5520.1033771749939603No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5440.1018789550665116No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5420.10150440008464942No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5350.10019345764813181No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)