FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007951255

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951255
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523837
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44150.842819426653711No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15490.29570267086899166No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13300.2538957729217295No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11400.21762494821862527No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11160.21304337036139104No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11100.2118979758970825No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10840.20693459988507876No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9710.185363004140601No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9700.18517210506321624No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9330.17810883919998013No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9320.17791794012259537No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC9310.17772704104521062No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8990.17161827056889836No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8770.16741849086643365No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7970.15214656467565293No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7560.14431970250287782No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7370.14069262003256738No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7170.1368746384848722No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7110.13572924402056363No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6930.132293060627638No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6470.12351170306793907No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6380.12179361137147623No Hit
GCCAACTACATCGTCCGTCAGAGCCGCGGTG6200.11835742797855058No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6150.11740293259162678No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6070.11587573997254871No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6020.11492124458562492No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5910.11282135473439257No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT5690.10862157503192787No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5640.10766707964500408No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5580.10652168518069552No Hit
TTCGTGGCAAAAGGTGTAGCCGCGGACGCCA5500.10499449256161746No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5460.1042308962520784No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5300.10117651101392228No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5290.10098561193653752No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)