FastQCFastQC Report
Sun 21 May 2023
EGAF00007951257

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951257
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences561522
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27110.482794975085571No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22260.3964225800591963No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12830.22848615014193566No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12770.22741762566738255No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11490.20462243687691667No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11350.20212921310295948No Hit
ATGTCCGATCACCACTTCCCGGCCTCCCTGC10970.19536189143078989No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10600.18877265717104585No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10380.18485473409768452No Hit
TCCTGCGATCGTTGCTGTCCGGGCTACCACC9870.17577227606398327No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9140.16277189495692065No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9010.16045675859538897No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT8530.15190856279896423No Hit
TACGACGACTTCCATACCGATGAAGATAAAC8140.14496315371436916No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA8030.1430041921776885No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7960.1417575802907099No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6750.12020900338722258No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6710.11949665373752053No Hit
GCGAACGAAGCAGGCCAGGTGGCCGGCGGTG6250.11130463276594685No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)