FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007951260

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951260
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences568075
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG29740.5235224222153765No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC21190.3730141266558113No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG21030.3701975971482639No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG18790.3307661840426No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16710.29415130044448357No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA14370.25295955639660256No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12480.21968930158869868No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11690.2057826871451833No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10500.18483474893279936No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8490.14945209699423492No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8420.14821986533468293No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG8220.14469920345024864No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC8130.1431149056022532No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7950.1399463099062624No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7550.13290498613739382No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7060.12427936452052986No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6810.11987853716498702No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6200.10914051841746249No Hit
CGGTTTGTCAACCGCGGTGGCGTCATCGTCGCTGCAATAGCTTG6040.10632398890991505No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)