FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951261

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951261
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences568075
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC29980.5277472164766976No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG29660.5221141574616028No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG20200.35558685032786164No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG20190.35541081723363993No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18470.3251331250275052No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17970.3163314703164195No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16330.28746204286405846No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14060.24750253047572945No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12570.2212735994366941No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11430.20120582669541873No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10210.17972978920036967No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9470.16670334022796285No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG8980.15807771861109887No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8620.1517405272191172No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC8180.1439950710733618No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7790.13712978039871496No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7670.1350173832680544No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7620.13413721779694585No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7480.13167275447784182No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7330.12903225806451613No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6600.11618184218633104No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6540.11512564362100074No Hit
AAATCCCCGTCTGCAGAAGCGTGCGGCTACT6020.10597192272147164No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)