FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951263

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951263
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529190
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT55691.0523630454090214No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22930.4333037283395378No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA15550.29384531075795084No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9300.17574028231826No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8840.16704775222509874No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8430.159300062359455No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8410.158922126268448No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG7250.13700183299004137No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7150.13511215253500633No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG6930.13095485553392922No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6760.12774239876036964No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6460.12207335739526447No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6430.12150645325875395No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5860.11073527466505413No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG5480.10355448893592094No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)