FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951269

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951269
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences534375
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA90821.6995555555555555No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA54311.016327485380117No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA51260.959251461988304No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT45410.8497777777777777No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44780.8379883040935673No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19180.35892397660818715No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC12260.2294269005847953No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC9010.16860818713450293No Hit
CCAGTTACGCTGAACAGCGCCGCACCGGCTT8530.15962573099415203No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8520.15943859649122807No Hit
ATTGACACTATGAAATCCATGCAGCGTGATG7430.1390409356725146No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7420.13885380116959065No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6940.12987134502923978No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6820.12762573099415203No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6820.12762573099415203No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC6710.1255672514619883No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6630.12407017543859648No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6490.12145029239766082No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA6110.1143391812865497No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG5960.11153216374269007No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC5740.10741520467836257No Hit

[OK]Adapter Content

Adapter graph