FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951272

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951272
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences534583
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA40910.7652693781882327No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA35980.6730479644882086No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT24390.456243464532168No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG21970.41097453529199396No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT20150.3769293075163258No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG17570.3286673912189501No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT17010.3181919365187445No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG15940.2981763355737088No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG15230.28489495550737676No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG13940.26076399735868894No Hit
GCTGACAACCAGCTCGTCTTCGCCGTTCGGCGGTGGAGGCGGAA12640.236445977518926No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT12030.2250352143633449No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC11830.2212939805418429No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG11730.2194233636310919No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT11680.2184880551757164No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG11400.2132503278256136No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG10630.19884657761283092No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA10450.1954794671734791No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG10350.19360885026272814No Hit
AACCAGTTCCGGAGTCGGCGGACGCGGCGGGCGCTGCAGGATTT9950.18612638261972417No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG9790.18313339556252256No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG9580.17920510004994547No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT9490.17752154483026958No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG9060.1694778921140403No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT8880.16611078167468848No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA8880.16611078167468848No Hit
AGACGCCGGACCGATACGGCTGGCCCACGGACGGCTAGTGCCCG8650.1618083627799612No Hit
GCCACGGCTCAGCTGAGAGCGGATTTTACGGTACTGGCCAGAAC8490.1588153757227596No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7770.14534693396535242No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG7750.14497281058320224No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG7580.14179276183492553No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7400.13842565139557375No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7350.13749034294019824No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7300.13655503448482276No Hit
CAGCAGTGCAGAGAAACGGCGACGGGCGCCCAGCGGCGGAGACG7210.13487147926514687No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6950.13000787529719426No Hit
GCTCACAACCAGTTCGTCTTCGCCGTTAGGCGGCGGCGGCGGAA6680.12495720963816656No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA6640.12420896287386617No Hit
GAACTCGGTCAGGCCCATGCGGCGTTTGTTGGAGATGTCGTAAA6360.11897123552376339No Hit
AACGCTAGACTGTTCGCTCGGACCAGGACGTTCTGGAGTGGACT6320.118222988759463No Hit
CACGCTAGACTGCTCGGACGGACCTGGACGTTCTGGGGTAGACT6240.11672649523086218No Hit
GGAGACAACCAGCTCGTCTTCACCGTTCGGCGGAGGCGGCGGGA6040.11298526140936019No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5970.1116758295718345No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5960.11148876788075938No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5910.11055345942538389No Hit
GTCACGGTGCGGGGTCGCCTCACAGGACGGGGTACGGCGGCGCA5690.10643810222173171No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG5640.10550279376635621No Hit
ATAATCCCAAGATTCGTCCAGGTCCGCCGGGTCGATGGACGGTG5440.10176155994485421No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5430.10157449825377912No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)