FastQCFastQC Report
Wed 31 May 2023
EGAF00007951274

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951274
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences589715
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG31550.5350041969425909No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT25720.43614288257887285No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC24670.4183376715871226No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT24560.4164723637689392No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC23760.4029064887276057No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT22950.3891710402482555No Hit
CAGACGTGGTTTGGTGGACGGTTTGTTAGTCTGGGTAGAAGTAG21270.36068270266145513No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA18310.310488965008521No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC17440.29573607590107087No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA17260.2926837540167708No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15480.26249968204980373No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT15130.2565646117192203No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14440.24486404449607013No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13660.23163731633076995No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT13160.2231586444299365No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT13110.22231077723985315No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG12750.21620613347125306No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11940.20247068499190285No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11930.2023011115538862No Hit
ACCCTGCGGGCCCACGTCACCGTCCGCGCCTTTGAACAGTGCCC11350.1924658521489194No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG11260.19093969120676937No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10740.18212187242990258No Hit
TGGCGGGTTTTTCAGACGCGGTTTCGTGGACGGCTTGTTCGTCT10180.17262575990096912No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT10170.17245618646295244No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9720.16482538175220232No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9580.16245135361996896No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC9300.15770329735550223No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA9290.15753372391748557No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG8970.15210737390095214No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG8730.1480376113885521No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT8500.1441374223141687No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG8250.13989808636375198No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG8010.13582832385135193No Hit
CGGTTCGCGCGGCTCACGTGGTACGCGCGGTTCACGCGGAACAC7800.13226728165300186No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7790.1320977082149852No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG7310.12395818319018508No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7190.12192330193398505No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7020.11904055348770169No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6790.1151403644133183No Hit
CGCATCCAGATCTACGGTCTCACCCTGGTTCAGAGCTTCGTTCA6780.11497079097530162No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT6750.11446207066125162No Hit
GATACGCGGTACACGAGGTTCGCGCGGGGAACGTGGCACACGCG6610.11208804252901824No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6180.1047963846943015No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6030.10225278312405145No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)