FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951278

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951278
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523238
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT16900.32298877375114193No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13830.2643156651466445No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT13470.25743543091289245No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10150.19398438186828937No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG9300.17773938437193018No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8950.17105026775578225No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8300.1586276226115076No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7300.13951586085108497No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6680.12766656855962297No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6670.12747545094201873No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6170.11791957006180745No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6090.11639062912097364No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5830.11142157106326375No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5760.11008374774003418No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5470.10454133682951162No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG5420.1035857487414905No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5320.10167457256544823No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)