FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951281

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951281
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425987
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT37390.8777263155917904No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA24780.5817078924943718No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15430.36221762635948984No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG15100.3544709110841411No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG11370.2669095535779261No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT10590.24859913565437441No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9920.232870956155939No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8700.20423158453192233No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8690.20399683558418447No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8520.2000061034726412No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG8090.18991189871991399No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7900.185451668712895No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7740.18169568554908955No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT7020.1647937613119649No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6980.16385476552101355No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6870.1612725270958973No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA6770.1589250376185189No Hit
GGTACCACCGTCTACCACAAAGTTCGTAAAG6770.1589250376185189No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6690.15704704603661615No Hit
GATGCGGCCTCCAATTCTGCAAACCGTCAGG6530.15329106287281066No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6410.1504740754999566No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6120.14366635601555916No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6060.14225786232913212No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG5790.13591964074021037No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5630.1321636575764049No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA5460.12817292546486161No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5430.12746867862164807No Hit
AAAATTTCCGGCAGCCAGGCATCCTCCCACA5290.1241821933533183No Hit
TACATCCTGAAAAAAGGTGAAGAACCGTACG5280.12394744440558045No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5280.12394744440558045No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5210.12230420177141556No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5130.12042621018951281No Hit
CCGTACGATCCGTTCGACCGTTCCCACCTGA4850.11385323965285325No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA4790.11244474596642622No Hit
GAGAAACCGTACGATCCGTTCGACCGCAGCC4720.11080150333226131No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG4700.11033200543678562No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT4680.10986250754130994No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC4580.10751501806393153No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4560.10704552016845585No Hit
GCGGAGCAGCACACGCCGATGAAGGCGCACG4550.106810771220718No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC4380.10282003910917469No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)