FastQCFastQC Report
Wed 31 May 2023
EGAF00007951282

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951282
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412421
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA31900.7734814667536328No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA29660.7191680346054153No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG26810.6500638910239779No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG19620.4757274726553692No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG19470.47209041246687244No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG19330.46869582295760887No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG17530.42505110069564844No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG16620.4029862688854351No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG14610.35424966235957916No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG14300.3467330713033527No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12580.3050281144752571No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11900.28854010828740534No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11620.2817509292688782No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG11520.279326222476547No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11500.2788412811180808No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10630.2577463320247999No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10540.25556409591170187No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG10030.24319809127081307No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG9910.24028844312001574No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG9740.2361664415730528No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC8900.21579890451747125No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8680.2104645495743427No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT8510.2063425480273798No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG8400.20367537055581553No Hit
GGAGCTCGGACCTACGTTGGTAACAGTGAACACGTCCGGACGCG8320.20173560512195063No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG8290.20100819308425127No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT7930.1922792486318592No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT7700.18670242300949758No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7520.1823379507833015No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7430.18015571467020353No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7380.17894336127403793No Hit
GTTGGTAGCGCCGGTTTCCACCGCGGTCAGCGCCGGAACTTCTT7310.17724606651940616No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT7190.17433641836860878No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG7080.17166924089704452No Hit
GATGCTGATGGAGCGACGAATGCGGAAACCTTGCGGAGTACGAG6950.16851712206701405No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG6870.16657735663314915No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6510.15784841218075704No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6380.15469629335072657No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6270.15202911587916232No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT6130.1486345263698987No Hit
GTCTTCTTTGGTTACGTCCTTAACAGTCAGGTTCTGACGACCGC5750.1394206405590404No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG5490.13311640289897944No Hit
TGGCTGTTCGTTATCTACCTCGATGATTGCAACGCACGCACCAC5020.1217202809750231No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA4680.11347627788109722No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4660.112991336522631No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4540.11008168837183363No Hit
GTCACGGCCATCCGTACCTTTGAACAGAGCCCAAGAATACTTGG4380.10620215750410382No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG4290.1040199213910058No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG4260.10329250935330646No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)