FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951285

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951285
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438150
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15270.3485107839780897No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15120.3450872988702499No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6630.1513180417665183No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5730.13077713111947964No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5730.13077713111947964No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5680.12963596941686636No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4900.11183384685609951No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4630.1056715736619879No Hit
AACGGTTTTGTAGCTTGGGATTCCCAGTACA4610.1052151089809426No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)