FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951286

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951286
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458882
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG15120.3294964718598681No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14700.3203437920859829No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG13670.29789793454526436No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG12120.2641201877606879No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11590.2525703775698328No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10030.21857470983825908No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG9990.21770302605027No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG9490.20680697870040665No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9400.20484569017743126No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7920.17259339002183566No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7840.17085002244585754No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7770.16932457581687665No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7390.1610435798309805No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7020.1529805047920816No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6780.14775040206414722No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG6760.14731456017015268No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6290.1370722756612811No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT6200.13511098713830572No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5890.1283554377813904No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5310.11571602285554891No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5290.11528018096155439No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACGGGT5070.1104859201276145No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4950.10787086876364729No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC4830.1052558173996801No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4650.10133324035372929No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)