FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007951287

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951287
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458882
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCACGAAGAACAGCCGCGTTACGAAGATC15490.337559546898767No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15100.3290606299658736No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14690.3201258711389856No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14500.3159853731460376No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC14390.3135882427290676No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13290.2896169385593682No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC12420.2706578161706059No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11670.2543137451458109No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC11350.24734027484189836No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10300.2244585754071853No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8920.19438548472156242No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG8890.1937317218805706No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8660.18871954009963346No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8420.18348943737169904No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8210.17891309748475642No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8170.17804141369676738No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7720.16823497108189034No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7150.1558134771030461No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG7060.15385218858007071No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC6030.13140633103935218No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5890.1283554377813904No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT5700.12421493978844235No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5560.12116404653048062No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5330.11615186474954345No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5080.11070384107461177No Hit
GCCGGTGATTCCCCAACTCCGGGCCCGTCCA4850.10569165929367463No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG4780.10416621266469375No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4760.10373037077069923No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4760.10373037077069923No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)