FastQCFastQC Report
Sun 21 May 2023
EGAF00007951289

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951289
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475336
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32300.6795193294848276No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG19260.4051870676742346No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC16580.3488058973021189No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15740.33113418718548565No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC12820.2697039567800461No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC11890.2501388491509164No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10810.2274180790009593No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG10670.22447279398152045No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10090.21227089890098794No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG10000.21037750138849148No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9330.19628220879546257No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC9290.1954406987899086No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC9090.1912331487621388No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA8870.18660484373159197No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA8490.1786104986788293No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG8330.17524445865661342No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8320.17503408115522495No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA8200.17250955113856303No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7690.16178029856774997No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG7500.15778312604136863No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6860.14431896595250515No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG6310.13274820337613813No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG6280.13211707087197266No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG6280.13211707087197266No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6000.1262265008330949No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5820.12243970580810205No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG5460.11486611575811637No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5140.10813403571368464No Hit
GCAGTCAACGAACTGACCTTCCCGGGTTCTG5040.10603026069979972No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT4800.10098120066647591No Hit
TCTATCCTGAAACCAGGTGCTTCTGCTGCCC4780.10056044566369896No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)