FastQCFastQC Report
Sun 21 May 2023
EGAF00007951294

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951294
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences536872
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA33960.6325530107735177No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC33260.6195145211521554No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA31170.5805853164255167No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA26940.501795586284999No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA21700.40419317826223006No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA20180.3758810293701292No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT17560.3270798253587447No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA16120.30025778956622806No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT15750.2933660164806509No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT13080.24363349178202626No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG12690.236369190421553No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG11320.21085100359117254No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10450.19464602363319378No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT10170.18943062778464886No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC10130.18868557123485674No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG10040.18700919399782442No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9330.17378444023901415No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9210.17154927058963776No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8890.16558881819130072No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8650.16111847889254796No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT7580.14118821618560848No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6670.12423817967783755No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6590.12274806657825328No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6440.1199541045165328No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6380.11883651969184462No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA6280.11697387831736429No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA6240.11622882176757217No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6200.11548376521778005No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT6110.11380738798074774No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG5870.10933704868199495No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC5810.10821946385730678No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5680.10579803007048234No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5660.10542550179558627No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5540.1031903321462099No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)