FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007951300

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951300
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523569
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT20960.4003292784714145No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC19200.36671384287457814No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17980.3434122341085893No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16820.3212566061015836No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC14460.27618136291491663No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12260.23416206841887127No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10110.19309775788864506No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC9920.18946881881853206No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9790.1869858605074021No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTGCGT9400.1795369855740122No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG9200.17571704971073535No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8620.1646392357072325No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8300.1585273383259895No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8110.15489839925587648No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG7670.1464945403566674No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG7240.13828167825062218No Hit
GTAATCGTTGCGTGGCCAGATGTACGGAGAGTTGTGGTCGTATG6740.12873183859243004No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6520.1245299091428255No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6260.11956399252056558No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA6090.11631704703678025No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5650.10791318813757117No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5510.10523923303327738No Hit
GCCGCCCTGTTCCTGGATATCCGGGGACAGGGTCGGATCGGACA5290.10103730358367283No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)