FastQCFastQC Report
Sun 21 May 2023
EGAF00007951301

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951301
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523569
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA43440.8296900695037331No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT40790.7790759193153146No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA21200.4049132015073467No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA19080.364421881356612No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16810.3210656093084197No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG12290.23473505879836276No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10930.20875949492808016No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG10390.19844566809723266No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT10110.19309775788864506No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG9220.17609904329706305No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9100.17380708177909693No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9030.17247010422695003No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8910.1701781427089839No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8670.16559421967305168No Hit
TACGACGACTTCCATACCGATGAAGATAAAC7330.14000064938909676No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6820.13025981293774078No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6530.12472090593598933No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6080.11612605024361641No Hit
GCATCTGCTGCTCCGGTTAAAGCCTCTCCGG5960.11383408872565029No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5960.11383408872565029No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5960.11383408872565029No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5700.10886817210339038No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5520.10543022982644121No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5490.10485723944694968No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5460.10428424906745815No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5260.1004643132041813No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)