FastQCFastQC Report
Sun 21 May 2023
EGAF00007951303

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951303
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493970
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT45900.9292062270988116No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15830.32046480555499324No Hit
CGTCGCGGTCAGAAAGCCAAATCTAACCCGA12110.24515658845678887No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9340.18908030852076038No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9230.18685345263882422No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8430.17065813713383404No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8320.16843128125189788No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7990.16175071360608945No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7550.15284329007834485No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7110.14393586655060026No Hit
CCGGGTACCTTCGACTTCTCCTCTTTTGGTA6940.14049436200578982No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6570.13300402858473187No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6530.13219426280948235No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA5910.11964289329311496No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC5870.11883312751786546No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5180.10486466789481141No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)