FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951304

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951304
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520713
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9870.18954779312212292No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9180.17629673159686815No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8570.16458202503106317No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8410.16150931511216352No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT7100.13635150265117255No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6720.12905381659378581No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6700.12866972785392336No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6590.12655723978467984No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT6150.11810728750770577No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5690.10927324649086927No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5520.10600849220203837No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5510.10581644783210713No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)