FastQCFastQC Report
Wed 31 May 2023
EGAF00007951307

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951307
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509531
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45050.884146401298449No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23990.47082513134627724No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15460.30341627889176515No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14360.2818277985048996No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13480.26455701419540717No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12300.24139846250767866No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11480.2253052316738334No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10330.20273545672392848No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10290.201950421073497No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9930.19488510021961372No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9580.18801603827833832No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9140.17938064612359209No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8840.17349287874535602No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8050.15798842464933438No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7710.15131562162066686No Hit
GCCGATGGTAAAGAAGAAGAGATTAGCGTCC7310.1434652651163521No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6790.13325980166074292No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6570.12894210558336983No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6560.12874584667076194No Hit
CTGGCACAGTACGATGAAGACGGCAACGGCT5830.11441894605038752No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5300.10401722368217046No Hit

[OK]Adapter Content

Adapter graph