FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007951311

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951311
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences530615
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA15850.29870998746737276No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10110.19053362607540306No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9470.17847215024075835No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8440.15906071256937704No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7970.15020306625330984No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7090.13361853698067339No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6370.12004937666669807No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5930.11175711203037983No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5470.10308792627422897No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)