FastQCFastQC Report
Wed 31 May 2023
EGAF00007951318

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951318
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480463
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG23360.48619768847965406No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG19230.4002389361927974No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15910.331138922247915No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG13680.2847253586644549No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG12640.26307957116364844No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA10440.21729040529655771No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8810.18336479604048594No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8610.17920214459802317No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6140.12779339928360767No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5520.11488917981197304No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5090.10593947921067803No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)