FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951320

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951320
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450725
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT14420.3199290032725054No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11830.26246602695656995No Hit
CTGCACAGAGTCTTTGATAACAATCTGATCGAAACGTGGTACGT10850.24072327916135117No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10110.22430528592822674No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9750.21631815408508512No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT9460.20988407565588774No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA8060.1788230073770037No Hit
GCTAGAGTTGGAAGTGGTGCGGGAGCTGGAGCCACCAGAGGAAG7680.1703921459870209No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7570.1679516334793943No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7030.1559709357146819No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6830.1515336402462699No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6770.1502024516057463No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6400.1419934549891841No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6360.14110599589550168No Hit
TCATTTGAAACGCTGCATCTGGACGCCCATACGTTTCTGGTAGG6270.1391092129347163No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6250.1386654833878751No Hit
CTGCATCTGCACACCCATACGTTTCTGGTAGGCTTGCAGGTTCT6240.13844361861445448No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6120.13578124133340727No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5900.13090021631815407No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5870.1302346219978923No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGACGCG5820.1291252981307893No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5720.12690665039658328No Hit
CATACGGTCCAGGTCTTCGGTCGCGGAGCGAGCACGGGTGCTGG5570.12357867879527427No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5280.11714460036607688No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5100.11315103444450607No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4580.10161406622663488No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4540.10072660713295246No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)