FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951322

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951322
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479479
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC22240.4638367895152864No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15360.32034771074437046No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14340.29907462057775214No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12290.25631988053699956No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12220.2548599625843885No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10420.21731921523153258No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10130.21127098371357245No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8900.18561813968912091No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8550.17831854992606558No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8540.17810999021854973No Hit
ACGGGTCACCAGGGTACCGGACGCTTTAGTGTACGCTTCGGCGT7800.16267657186237564No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7510.1566283403444155No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6960.14515755643104286No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6160.12847277982977356No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA6100.12722142158467836No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC6080.12680430216964664No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6050.12617862304709904No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6030.1257615036320673No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT5690.11867047357652785No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5640.11762767503894853No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5410.11283080176608361No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5400.11262224205856775No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA5340.11137088381347254No Hit
GTCCAGGTGCATGGTGTCACGGATTTTCTGGTACACGGCAGAAG5330.11116232410595668No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5190.10824248820073454No Hit
ACGCATTGCGCCGTTAGACGGGTTCAGATAGTACCAAGTGGAAC4930.10281993580532203No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)