FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007951329

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951329
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469011
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA19810.422378153177644No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17190.36651592393355376No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG17030.36310449008658646No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13080.2788847169895802No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12080.2575632554460343No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10360.22089034159113538No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10290.21939783928308718No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10180.21705247851329712No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10010.2134278300508943No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9530.2031935285099923No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9350.19935566543215405No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9320.19871602158584764No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8570.18272492542818825No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8090.17249062388728623No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6890.14690487003503117No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6850.14605201157328931No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6330.13496485157064547No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6200.1321930615699845No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5120.10916588310295493No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5050.10767338079490674No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG4790.1021298007935848No Hit

[OK]Adapter Content

Adapter graph