FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951331

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951331
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461132
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42570.9231629988810145No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA34670.7518454585671782No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT24450.5302169443890252No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22770.4937848598665892No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15100.32745504540999104No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13380.29015553030368746No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA10280.22292966005395418No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7970.17283554383560454No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6980.15136663688488328No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6050.1311988758099633No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6050.1311988758099633No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5680.1231751429091887No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5520.1197054205737186No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5360.11623569823824849No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5080.1101636841511758No Hit
ATCGTTCAGAACGAGCCAACCTGGGCAGCTA4620.10018823243669926No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)