FastQCFastQC Report
Sun 21 May 2023
EGAF00007951332

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951332
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442419
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG21620.48867702336472896No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG19210.434203775154322No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG18990.4292311134919612No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16590.37498389535711624No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT15690.35464118855654936No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG12270.2773389027143952No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT11950.2701059402964159No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG11880.26852372976748284No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA9920.22422183495735942No Hit
TTCAACGACAGCAGCAGAGTGCAGCACACCACGCAGCGGCAGGC9830.22218756427730274No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA9300.21020797027252444No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT8440.190769383774205No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA7520.1699746168225144No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC7040.1591251731955454No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTGCGT6710.15166618070200422No Hit
GATGCGATGCGGGGAGTCGCAGATACGACCGGTAGAGCTGGACT5140.11617945883879309No Hit
CTGAGACAGGGAGGCAGCTTCCAGTGCACGCAGGGTAGCCAGCA5040.11391915808317454No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG4950.11188488740311786No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4920.11120679717643228No Hit
GTAATCGTTGCGTGGCCAGATGTACGGAGAGTTGTGGTCGTATG4800.10849443626969005No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC4790.1082684061941282No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4760.10759031596744263No Hit
AGATTCAACATCCGTTTCGCTACCGTTGAAGTGCATGTAGGTGG4680.1057820753629478No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG4560.10306971445620554No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)