FastQCFastQC Report
Wed 31 May 2023
EGAF00007951334

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951334
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468265
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17190.36709982595325297No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14840.3169145676059496No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13580.29000672696016144No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG13230.28253232678077583No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12390.2645937663502504No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12110.2586142462067419No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11750.2509262917365167No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10490.22401845109072854No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8420.17981271288693368No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8020.17127054125335014No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT7400.15803017522129564No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7230.15439975227702263No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7220.15418619798618305No Hit
TTCCCAGGCGTCGGACGCTGCGTTATCAGACTGAACAACTTCCG6720.14350848344420358No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6720.14350848344420358No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6680.14265426628084524No Hit
TTCCTCACCGGCAGCTTTTGCCTGTTCTTCAATGTTAGCAACAA6090.13005456312130953No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5940.1268512487587157No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5870.12535636872283856No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5510.11766841425261337No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5490.11724130567093419No Hit
ACGGTTCTGGATAGCAACACCGGCAGACGCGTCCCAACCGCCAC5100.10891268832819025No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5020.10720425400147353No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4980.10635003683811517No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4940.10549581967475681No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)