FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951335

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951335
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468265
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30480.6509134784790663No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24490.5229944582661527No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16150.3448901797059358No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15250.32567029353037275No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC14410.3077317330998473No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12840.27420370943803185No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12690.27100039507543805No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11740.2507127374456771No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9800.2092832050227969No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9110.1945479589548653No Hit
GCTGCTTCTAGCGATGCACTGGAAGCCCTGG8860.18920910168387559No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8580.18322958154036711No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8400.1793856043052545No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7670.16379614107396454No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT7620.16272836961976658No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7080.1511964379144288No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6660.14222715769916608No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6540.13966450620909102No Hit
ACTACCGACCCGGATGCAGCGGCTTCCGCGA6330.13517986610145963No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6150.13133588886634703No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6060.12941390024879076No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC5990.12791902021291363No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5930.1266376944678761No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5870.12535636872283856No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5590.11937684857933008No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5510.11766841425261337No Hit
TCTGTCGATGCAGCTAATGTGTCCATTGATG5510.11766841425261337No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5290.11297021985414242No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5290.11297021985414242No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4700.1003705166946067No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)