FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951337

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951337
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences407832
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAACTGTCCTCTGGCTACCGCATCAACCGTG16110.3950155946566233No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14560.3570097491123796No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10960.2687381078483297No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10570.259175346711391No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8720.21381353106180978No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8200.20106318287922476No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7970.19542360579846602No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7550.18512524765099356No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5510.13510465093469862No Hit
ATGGTGGTTCAGCACAACCTGACTGCGATGA4920.12063790972753487No Hit
ATGGTGGTCCAGCACAATCTGCAGGCCATGA4760.11671472567135488No Hit
ATGATCATCAACCACAACACCAGCGCAATCA4740.11622432766433238No Hit
ATGGTTGTCCAGCACAACATGCAGGCTGCGA4450.10911355656250614No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4150.10175758645716863No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)