FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007951340

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951340
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488062
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16280.3335641783216067No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14040.2876683700021719No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14000.2868488019964677No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG13490.2763993099237392No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12340.25283672975974364No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11330.23214263761571277No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9760.19997459339182316No Hit
GCCAGCGGTGTTCAGAGAACGGCGTTCTTTTGCGACGCTAGAGT7760.1589961931066135No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6600.1352287209411919No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5990.12273030885420295No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5650.1157639808057173No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5600.11473952079858706No Hit
TTGTTCGGCGGCGACCTGCTGTTCGCGAGCACGTTCAGCGTTGT5260.10777319275010143No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)