FastQCFastQC Report
Wed 31 May 2023
EGAF00007951341

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951341
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488062
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39700.8134212456614118No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29080.5958259401469486No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25680.5261626596620921No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16010.32803209428310337No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12980.26594981785101074No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12210.25017313374120503No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10060.20612135343460464No Hit
TCCTGCGATCGTTGCTGTCCGGGCTACCACC7590.15551302908237066No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7310.14977605304244132No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6580.1348189369383398No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5680.11637865680999544No Hit
CGTGAAGCTCTGGATGCGCTGGCGGAGTCTA5400.1106416807700661No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)