FastQCFastQC Report
Wed 31 May 2023
EGAF00007951345

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951345
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451045
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT39540.8766309348291191No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38730.8586726379851235No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT31960.7085767495482713No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA15040.3334478821403629No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA12840.2846722610825971No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11120.24653859371016196No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG8630.19133345896750878No Hit
GTGCAGGACGCCACCGTTGGCGCAGAAAAAG6640.14721369264707512No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6560.14544003369952No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5940.1316941768559678No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5940.1316941768559678No Hit
AGCCCGGACCCAGATCCGGATTCCGACAGCG5830.12925539580307951No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5540.1228258821181922No Hit
GGCTACACTTCCGGCCGTAACCTGTACACCA5490.12171734527597025No Hit
AGCGACAGCGACTCTGACTCCGACAGCGACT5420.12016539369685952No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4860.10774978106397365No Hit
GACCCGGAACCGGAACCGTCTCCGGATCCAG4840.10730636632708487No Hit
GAAGTTGACGTAACTATCACCGATCACGATG4770.10575441474797415No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)