FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007951349

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951349
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446155
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38360.8597908798511729No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13330.2987750893747689No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11680.2617924263988972No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10050.22525803812576345No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9290.20822359942172564No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8100.1815512546088243No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7550.16922370028353376No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7530.16877542558079592No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7140.16003406887740806No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6430.14412031693021482No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6330.14187894341652565No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5720.12820656498302158No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5360.12013762033374052No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5250.11767210946868241No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4990.11184453833309052No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4650.10422386838654728No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4580.10265490692696484No Hit
GAACCGATCTACGCTACCATCGACGACCTGG4490.10063767076464458No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)